By James F. Gimpel
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Description logics (DLs) are used to symbolize based wisdom. Inference providers checking out consistency of data bases and computing subconcept/superconcept hierarchies are the most characteristic of DL platforms. extensive study over the past fifteen years has resulted in hugely optimized platforms that let to cause approximately wisdom bases successfully.
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Comp. : Molecular dynamics simulations of biomolecules: Long-range electrostatic effects. Ann. Rev. Biophys. Biomol. : Electrostatics calculations: Recent methodological advances and applications to membranes. Curr. Opin. Struct. : Effect of artiﬁcial periodicity in simulations of biomolecules under Ewald boundary conditions: A continuum electrostatics study. Biophys. : Molecular dynamics simulations of a polyalanine octapeptide under Ewald boundary conditions: Inﬂuence of artiﬁcial periodicity on peptide conformation.
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Figure 3 shows the distance between Pα and O3 in the 1ns simulations of the three model systems. 6Å. 9Å (after 200ps for YC-1 “Flip”–mode simulation and after 800ps for the no–YC-1–mode simulation). These results suggest that different initial binding mode of YC-1 makes a signiﬁcant difference in terms of YC-1’s effect on GTP catalysis by sGC, and initial “Normal”–mode of binding positively correlates with more chances of cyclization. Dynamics of YC-1 YC-1 does not always stay extended in its binding pocket after initial binding.